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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65080919_65083661_R

Intron Information:

Intron Rank:
130447
Intron Class:
major
Intron Phase:
Intron Coordinates:
65080919 - 65083661
Intron Length:
2743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80.3
0.68
0.9
73.1
41.8
Minor 5ss
31.4
-2.1
2.7
33.7
35.3
Minor BPS
61.3
0.44
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017429
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029531
65080703 - 65093146
12444