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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65093249_65098825_R

Intron Information:

Intron Rank:
130446
Intron Class:
major
Intron Phase:
Intron Coordinates:
65093249 - 65098825
Intron Length:
5577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
61.7
0.45
1.9
82.28
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017429
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024483
65083660 - 65099125
15466