About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65103587_65104766_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65103587 - 65104766
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TATTCTGCCAGC
Flanking Amino Acid:
KKFRSETNTSGLAEAVTELL
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
72.9
0.52
0.9
65.6
41
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
38.7
-0.9
2.5
55.04
43.5

Associated Gene:

Gene:
NAF1
Ensembl Gene ID:
ENSAPLG00000003210
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003269
65101251 - 65119872
18622