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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65108620_65111775_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65108620 - 65111775
Intron Length:
3156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GATTGTTTAACT
Flanking Amino Acid:
TQYIFAEKLRQEKGSDASWK
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
67.9
0.64
1.8
81.83
39.6

Associated Gene:

Gene:
NAF1
Ensembl Gene ID:
ENSAPLG00000003210
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003269
65101251 - 65119872
18622