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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65111937_65112919_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65111937 - 65112919
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
FKEDREAAGKIFEIFGPVMH
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.9
80.8
36.8
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
NAF1
Ensembl Gene ID:
ENSAPLG00000003210
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003269
65101251 - 65119872
18622