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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65116688_65117780_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65116688 - 65117780
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATATTCTGAACG
Flanking Amino Acid:
VKTKDELPLDELPPVEDLSL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
65.2
0.34
1.5
67.58
39.6

Associated Gene:

Gene:
NAF1
Ensembl Gene ID:
ENSAPLG00000003210
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003269
65101251 - 65119872
18622