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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65117920_65119549_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65117920 - 65119549
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
TTGTTTCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATATTTTAACT
Flanking Amino Acid:
SRPAAAADSESDTDSDSSTT
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.9
0.65
0.9
78.6
35
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
68.2
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
NAF1
Ensembl Gene ID:
ENSAPLG00000003210
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003269
65101251 - 65119872
18622