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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65169339_65169905_R

Intron Information:

Intron Rank:
153835
Intron Class:
major
Intron Phase:
Intron Coordinates:
65169339 - 65169905
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACAG
5'SS Class:
major
3'SS Sequence:
TGTCTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTGTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
58.6
42.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
0.9
74
40.4
Minor 5ss
24.5
-2.9
3.1
28.8
43.7
Minor BPS
45.9
-0.2
1.8
59.31
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030256
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029685
65164373 - 65169961
5589