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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65201884_65202874_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65201884 - 65202874
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTGCG
5'SS Class:
major
3'SS Sequence:
GATTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTATCTTTGATT
Flanking Amino Acid:
MPKLPKSKGAK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
58.7
40.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
84.4
0.77
0.8
81.3
36
Minor 5ss
26.6
-2.7
3.1
29
38.3
Minor BPS
70.7
0.73
1.2
79.08
37.7

Associated Gene:

Gene:
TMA16
Ensembl Gene ID:
ENSAPLG00000003349
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003419
65201881 - 65290192
88312