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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65202988_65209513_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65202988 - 65209513
Intron Length:
6526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTTTGCTAACA
Flanking Amino Acid:
REAHKQDKKEKLKIEKALRL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.3
0.59
0.9
77.5
36.7
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
50.5
0.01
2.3
71.21
41.3

Associated Gene:

Gene:
TMA16
Ensembl Gene ID:
ENSAPLG00000003349
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003419
65201881 - 65290192
88312