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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65209552_65210339_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65209552 - 65210339
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
IEKALRLNIIGEKLQWFQSH
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
TMA16
Ensembl Gene ID:
ENSAPLG00000003349
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003419
65201881 - 65290192
88312