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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65211575_65217201_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65211575 - 65217201
Intron Length:
5627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAGTATTTAATT
Flanking Amino Acid:
ERQLYEGYGIEIPDIVNGKH
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.6
0.49
0.9
71.3
34.1
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
66.9
0.61
1.4
77.89
38.8

Associated Gene:

Gene:
TMA16
Ensembl Gene ID:
ENSAPLG00000003349
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003419
65201881 - 65290192
88312