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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65217245_65218983_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65217245 - 65218983
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCTATAAGT
Flanking Amino Acid:
IVNGKHLKFFREWNGDLKKL
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.2
0.75
0.8
80.5
31.1
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
60.8
0.42
1.9
81.68
39.8

Associated Gene:

Gene:
TMA16
Ensembl Gene ID:
ENSAPLG00000003349
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003419
65201881 - 65290192
88312