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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65274156_65318341_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65274156 - 65318341
Intron Length:
44186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CATCTTCTAATT
Flanking Amino Acid:
SGDASHNSTLNDKSPGRSTS
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
49.8
0.07
1.6
66.52
38.6

Associated Gene:

Gene:
MARCHF1
Ensembl Gene ID:
ENSAPLG00000003514
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038585
65227634 - 65382356
154723
ENSAPLT00000003582
65227634 - 65427130
199497