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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65541082_65542231_F

Intron Information:

Intron Rank:
133150
Intron Class:
major
Intron Phase:
Intron Coordinates:
65541082 - 65542231
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GTTTGTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
49.5
0.04
2.1
74.97
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043350
65540597 - 65557414
16818