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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65544136_65557087_F

Intron Information:

Intron Rank:
133154
Intron Class:
major
Intron Phase:
Intron Coordinates:
65544136 - 65557087
Intron Length:
12952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.7
0.71
0.8
73.5
37.1
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
75.7
0.67
1.6
80.74
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043350
65540597 - 65557414
16818