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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65596054_65596287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65596054 - 65596287
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GACCCCCTGACT
Flanking Amino Acid:
SLLPAAGQRPANLALRRKLH
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
78.2
0.63
0.7
72.8
25.4
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
52.8
0.17
1.7
67.74
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023085
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025647
65595978 - 65596376
399