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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65606010_65607740_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65606010 - 65607740
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTCTTTCAAG
Flanking Amino Acid:
PSHITSEVGFRENSSLEEIV
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
76.9
0.6
1
75.7
38.5
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
55.1
0.01
2
65.2
42.6

Associated Gene:

Gene:
TMEM192
Ensembl Gene ID:
ENSAPLG00000003617
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003706
65605886 - 65618244
12359