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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65607844_65612025_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65607844 - 65612025
Intron Length:
4182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTTCATGAAAC
Flanking Amino Acid:
SSLTCLVIYTVKISNFNRAK
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
51.6
0.03
1.8
64.67
40.1

Associated Gene:

Gene:
TMEM192
Ensembl Gene ID:
ENSAPLG00000003617
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003706
65605886 - 65618244
12359