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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65626182_65626756_F

Intron Information:

Intron Rank:
147109
Intron Class:
major
Intron Phase:
Intron Coordinates:
65626182 - 65626756
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCCAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAA
U12 Branch Point Sequence:
ATTGCCTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
60.3
0.26
1.2
70.7
35.5
Major PPT
68.8
0.42
1
63.6
36.8
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
67.4
0.53
1.7
76.69
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029223
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047876
65625542 - 65627278
1737