About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65630494_65632690_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
65630494 - 65632690

Intron Length:
2197

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGT|GTGAGTGCG

5'SS Class:
major

3'SS Sequence:
TTTTTTCTTTCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TACTTTTTATTT

Flanking Amino Acid:
MEMLLPPVCTKLCHQKP

Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.2
0.43
1.1
58.8
40.4

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
97.3
1.06
0.5
96.6
11.5

Minor 5ss
29.5
-2.3
3.1
33.4
41.6

Minor BPS
58.6
0.35
1.5
71.82
40.2

Associated Gene:

Gene:
KLHL2

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

65630471 - 65685991
55521