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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65632817_65637271_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65632817 - 65637271
Intron Length:
4455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACTT
5'SS Class:
major
3'SS Sequence:
TATTTCTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TATTTCTAAATA
Flanking Amino Acid:
KAFKVMNELRSQNLLCDVTI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
40.1
Major BPS
79
0.72
1
69
38.9
Major PPT
70.2
0.46
1
67.5
37.9
Minor 5ss
44.1
-0.6
3.1
65.7
45.3
Minor BPS
67.2
0.54
1.6
75.8
35.8

Associated Gene:

Gene:
KLHL2
Ensembl Gene ID:
ENSAPLG00000003706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003861
65630471 - 65685991
55521