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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65641964_65664404_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65641964 - 65664404
Intron Length:
22441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCGCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGATATTAAACA
Flanking Amino Acid:
EIQVTEENVQVLLPAAGLLQ
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.9
0.74
0.8
80.5
31.5
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
49.4
-0
1.8
60.44
39.1

Associated Gene:

Gene:
KLHL2
Ensembl Gene ID:
ENSAPLG00000003706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003861
65630471 - 65685991
55521