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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65677147_65677888_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65677147 - 65677888
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
ATCTCCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
AAATAATTAACA
Flanking Amino Acid:
KLRTPASLPKLMMVVGGQAP
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
36.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.2
0.7
0.8
77.7
30.3
Minor 5ss
34
-1.8
3.1
43.1
38
Minor BPS
56.8
0.21
1.8
66.99
38.1

Associated Gene:

Gene:
KLHL2
Ensembl Gene ID:
ENSAPLG00000003706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003861
65630471 - 65685991
55521