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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65678007_65678617_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65678007 - 65678617
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTTCTTCACCA
Flanking Amino Acid:
AELPSRRCRAGMVYMGGMVY
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
84.3
0.77
0.7
77.7
31.1
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
56.9
0.21
1.9
71.01
41.7

Associated Gene:

Gene:
KLHL2
Ensembl Gene ID:
ENSAPLG00000003706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003861
65630471 - 65685991
55521