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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65680748_65684667_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65680748 - 65684667
Intron Length:
3920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
AEMSTRRSGAGVGVLNNLLY
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.6
0.82
0.8
80.7
35.9
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
KLHL2
Ensembl Gene ID:
ENSAPLG00000003706
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003861
65630471 - 65685991
55521