Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65687635_65687853_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

65687635 - 65687853

Intron Length:

219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TCCAAATTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCAAAT

U12 Branch Point Sequence:

CCCCTCCAAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

67.9

37.4

Major BPS

64.7

0.37

1.1

69.5

34.1

Major PPT

67.6

0.4

57.6

41.9

Minor 5ss

24.1

-3

3.3

42.8

Minor BPS

42.4

-0.5

1.9

52.59

43.2

Associated Gene:

Gene:

MSMO1

Ensembl Gene ID:

ENSAPLG00000004461

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004590

65687034 - 65693962

6929