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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65688162_65689208_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65688162 - 65689208
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AAGTGCCTAACA
Flanking Amino Acid:
PYMQKYKIQQDKPETWEKQW
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
49.8
-0
2.1
63.86
42.1

Associated Gene:

Gene:
MSMO1
Ensembl Gene ID:
ENSAPLG00000004461
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004590
65687034 - 65693962
6929