About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65692245_65693757_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65692245 - 65693757
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATCC
5'SS Class:
major
3'SS Sequence:
CTCCCCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
CTCCCCTCCATA
Flanking Amino Acid:
CRLMETIDVHSGYDVPLNPL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
0.9
68
31.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
69.9
0.45
0.7
64.4
24.2
Minor 5ss
33.1
-1.9
3.1
42.5
44.5
Minor BPS
46.5
-0.2
2
56.52
43.2

Associated Gene:

Gene:
MSMO1
Ensembl Gene ID:
ENSAPLG00000004461
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004590
65687034 - 65693962
6929