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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65702546_65741053_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65702546 - 65741053
Intron Length:
38508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TGTTCTAAGACG
Flanking Amino Acid:
LSDRPGEHEPGEPEFKYVGN
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
47.7
-0.3
2
60.08
42

Associated Gene:

Gene:
CPE
Ensembl Gene ID:
ENSAPLG00000004644
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004802
65702032 - 65757657
55626