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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65741251_65743105_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65741251 - 65743105
Intron Length:
1855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAAG
5'SS Class:
major
3'SS Sequence:
TTTCCTCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATTT
Flanking Amino Acid:
PDGFEKAASQPGELKDWFVG
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.7
39.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.2
0.66
0.8
78.4
29.2
Minor 5ss
37.5
-1.4
2.4
42.3
44.5
Minor BPS
68.1
0.65
1.8
88.32
37.1

Associated Gene:

Gene:
CPE
Ensembl Gene ID:
ENSAPLG00000004644
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004802
65702032 - 65757657
55626