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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65743274_65744150_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65743274 - 65744150
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CAAATTGTAACT
Flanking Amino Acid:
MKKAVDQNPKLAPETKGVIH
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
81.4
0.71
0.9
77.2
37.1
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
46.9
-0.1
2
61.82
42.3

Associated Gene:

Gene:
CPE
Ensembl Gene ID:
ENSAPLG00000004644
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004802
65702032 - 65757657
55626