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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65751001_65753736_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65751001 - 65753736
Intron Length:
2736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTAATTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
KNSLINYIEQIHRGVKGFVK
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
0.9
75
39.4
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
CPE
Ensembl Gene ID:
ENSAPLG00000004644
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004802
65702032 - 65757657
55626