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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65753837_65756114_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65753837 - 65756114
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTCTCCACA
Flanking Amino Acid:
VEGISHDITSAKDGDYWRLL
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.5
0.78
0.7
80
25.6
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
54.3
0.13
2
70.77
41.8

Associated Gene:

Gene:
CPE
Ensembl Gene ID:
ENSAPLG00000004644
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004802
65702032 - 65757657
55626