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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66030140_66034237_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66030140 - 66034237
Intron Length:
4098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
KKGFKAHFFSDKKAACKEKI
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
TLL1
Ensembl Gene ID:
ENSAPLG00000013257
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013904
65923554 - 66049390
125837