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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66030140_66036931_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66030140 - 66036931
Intron Length:
6792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
GTGTATTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TAATGCTCACCT
Flanking Amino Acid:
KKGFKAHFFSDKDECSKDNG
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
71.7
0.49
0.9
69.7
41.2
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
47.9
-0
2.2
70.45
45.9

Associated Gene:

Gene:
TLL1
Ensembl Gene ID:
ENSAPLG00000013257
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024678
65922058 - 66049390
127333