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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66047040_66049255_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66047040 - 66049255
Intron Length:
2216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTCATTTATT
Flanking Amino Acid:
MRLGRFCGSGPPEEIYSAGE
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.4
0.66
0.8
78.2
34.7
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
61.7
0.45
1.9
82.28
38.7

Associated Gene:

Gene:
TLL1
Ensembl Gene ID:
ENSAPLG00000013257
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024678
65922058 - 66049390
127333
ENSAPLT00000013904
65923554 - 66049390
125837