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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66113274_66174766_F

Intron Information:

Intron Rank:
133215
Intron Class:
major
Intron Phase:
Intron Coordinates:
66113274 - 66174766
Intron Length:
61493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTCAAATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.4
0.75
0.8
77.3
36.6
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
44.2
-0.4
2
60.78
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021628
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042908
66112652 - 66199908
87257