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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66129569_66161484_F

Intron Information:

Intron Rank:
133206
Intron Class:
major
Intron Phase:
Intron Coordinates:
66129569 - 66161484
Intron Length:
31916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TAAGTTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.1
39.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
46.4
-0.4
3.1
63.6
48.1
Minor BPS
49.8
-0
1.7
60.29
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021628
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018642
66129413 - 66174816
45404