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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66199526_66202957_F

Intron Information:

Intron Rank:
133209
Intron Class:
major
Intron Phase:
Intron Coordinates:
66199526 - 66202957
Intron Length:
3432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
63.7
0.43
1.7
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021628
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023626
66174837 - 66202999
28163