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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66281906_66282874_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66281906 - 66282874
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CATACCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TTTTGTATAACT
Flanking Amino Acid:
GSRTNGAAECAIDLETSGDF
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
73.3
0.52
0.9
69.9
36
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
64.1
0.52
2
88.67
36.3

Associated Gene:

Gene:
SPOCK3
Ensembl Gene ID:
ENSAPLG00000013179
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032643
66281733 - 66471854
190122
ENSAPLT00000031817
66281733 - 66471854
190122
ENSAPLT00000013718
66281733 - 66471854
190122