Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66284282_66290829_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

66284282 - 66290829

Intron Length:

6548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGAT

5'SS Class:

strong_major

3'SS Sequence:

CATGTCATTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATCTGATCAACA

Flanking Amino Acid:

EWCYCFQRQQDPPCQTELSN

Intron Amino Acid Position:

311

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

77.5

30.5

Major BPS

100

1.24

0.5

100

Major PPT

70.7

0.47

0.9

67.1

38.8

Minor 5ss

31.4

-2.1

3.5

46.6

48.7

Minor BPS

47.3

-0.2

2.2

63.27

42.8

Associated Gene:

Gene:

SPOCK3

Ensembl Gene ID:

ENSAPLG00000013179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032643

66281733 - 66471854

190122

ENSAPLT00000031817

66281733 - 66471854

190122

ENSAPLT00000013718

66281733 - 66471854

190122