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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66355007_66387951_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66355007 - 66387951
Intron Length:
32945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTTGTTTACTT
Flanking Amino Acid:
VCISHRRLTHSMKEAGLGHK
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
84
0.76
0.8
77.4
36
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
60.1
0.39
2
82.98
39.3

Associated Gene:

Gene:
SPOCK3
Ensembl Gene ID:
ENSAPLG00000013179
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032643
66281733 - 66471854
190122
ENSAPLT00000031817
66281733 - 66471854
190122
ENSAPLT00000013718
66281733 - 66471854
190122