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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66388067_66407773_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66388067 - 66407773
Intron Length:
19707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
AAATTATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTAAAATT
Flanking Amino Acid:
TWSPGKPFDQALDPAKDPCL
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.9
0.47
1
67.6
42.7
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
60.6
0.41
1.9
84.42
36.8

Associated Gene:

Gene:
SPOCK3
Ensembl Gene ID:
ENSAPLG00000013179
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013718
66281733 - 66471854
190122
ENSAPLT00000032643
66281733 - 66471854
190122
ENSAPLT00000031817
66281733 - 66471854
190122