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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66407820_66471356_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66407820 - 66471356
Intron Length:
63537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTCCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAATG
Flanking Amino Acid:
EVGQWNKFRDDDYFRTWSPG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.8
0.72
0.7
73.2
31.7
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
61.8
0.23
1.9
72.18
41

Associated Gene:

Gene:
SPOCK3
Ensembl Gene ID:
ENSAPLG00000013179
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032643
66281733 - 66471854
190122
ENSAPLT00000031817
66281733 - 66471854
190122
ENSAPLT00000013718
66281733 - 66471854
190122