Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66471543_66471718_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

66471543 - 66471718

Intron Length:

176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGACGGGC

5'SS Class:

major

3'SS Sequence:

TCCTCTCGCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAC

U12 Branch Point Sequence:

CCCTCCCCACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.2

58.8

40.6

Major BPS

49.9

-0

1.3

60.3

37.5

Major PPT

71.8

0.49

0.9

64.6

36.5

Minor 5ss

29.7

-2.3

3.5

41.1

45.6

Minor BPS

42.9

-0.5

2.1

50.84

46.1

Associated Gene:

Gene:

SPOCK3

Ensembl Gene ID:

ENSAPLG00000013179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013718

66281733 - 66471854

190122