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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66536753_66538523_R

Intron Information:

Intron Rank:
153521
Intron Class:
major
Intron Phase:
Intron Coordinates:
66536753 - 66538523
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
ACTTTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
84.3
0.77
0.9
81.2
36.5
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
50.4
0.01
2
65.27
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030067
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043349
66536313 - 66539148
2836