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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66700635_66700936_R

Intron Information:

Intron Rank:
147564
Intron Class:
major
Intron Phase:
Intron Coordinates:
66700635 - 66700936
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
AACATGTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCTATATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70.7
0.46
1
65.7
44.4
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
58.5
0.26
1.8
73.13
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026760
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017417
66649181 - 66701613
52433