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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66747414_66749258_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66747414 - 66749258
Intron Length:
1845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTTTGTTAATT
Flanking Amino Acid:
QVLGGALQGISCEKDVLIDI
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
66.5
0.6
2
85.57
35

Associated Gene:

Gene:
ANXA10
Ensembl Gene ID:
ENSAPLG00000007293
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019619
66737379 - 66761757
24379
ENSAPLT00000007579
66737379 - 66761757
24379