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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66763960_66765514_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66763960 - 66765514
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGCT
5'SS Class:
major
3'SS Sequence:
AATTGTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAATT
Flanking Amino Acid:
LLDTVFQEEKLTFFSSLKKM
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
37.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.4
0.62
0.9
69.6
40.8
Minor 5ss
40.7
-1
3.4
57.2
41.4
Minor BPS
56.8
0.29
1.5
73.18
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007278
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032888
66763386 - 66772497
9112
ENSAPLT00000007556
66763386 - 66772606
9221